Collaboration Phenotypes
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Contact authors listed below are open to engaging others in the development of their phenotypes. Unless the status of the phenotype is marked as final, these phenotypes cannot be viewed in-depth until the author has shared access with you and you have logged into PheKB. Click on an author's name to send an email to him or her expressing your interest in collaborating.
| Title | Institution | Phenotype Attributes | Description | Status | Contact Author | Type of Phenotype |
|---|---|---|---|---|---|---|
| Lipids (HDL-C, LDL-C, TG) | This document describes the PRIMED Harmonization algorithms for HDL-C, LDL-C, and TG.• High density lipoprotein (HDL-C)• Triglycerides (TG):o Non-fasting• Low-density lipoprotein (LDL-C):o Unadjusted non-fastingo Adjusted non-fastingOverall procedure1. Extract trait measurements using measurement codes and calculations | Final | Johanna Smith | |||
| Major Adverse Cardiac Events while on Clopidogrel | Vanderbilt University | CPT Codes, ICD 9 Codes, Medications | Patients with Major Adverse Cardiac Events (MACE) while on Clopidogrel. A MACE event can be either a revascularization event (bypass surgery or angioplasty/intracardiac stenting) or an acute myocardial infarction (AMI). A revascularization event is defined by the presence of a bypass, an angioplasty or a stent CPT code. An AMI event has been illustrated in our previous algorithm. | Testing | Wei-Qi Wei | Drug Response - adverse effect or efficacy |
| Multimodal Analgesia | Stanford University School of Medicine | CPT Codes, ICD 10 Codes, ICD 9 Codes, Medications | Described in this document are the Stanford University algorithms for extracting both cases and controls of Multimodal analgesia from electronic health records (EHR) for surgical patients. | Final | Tina Hernandez-Boussard | Other Trait |
| Obsessive-compulsive disorder | Vanderbilt University Medical Center | ICD 10 Codes, ICD 9 Codes, Medications, Natural Language Processing | This algorithm for obsessive-compulsive disorder was developed from March 2016 to September 2017 at VUMC in collaboration with the OCD Psychiatric Genomcis Consortium workgroup and clinicans at VUMC. It has been internally valdiated and is now ready for validation at another PsycheMERGE site. | Testing | Lea Davis | Disease or Syndrome |
| Ovarian/Uterine Cancer (OvUtCa) | KPWA/UW | CPT Codes, ICD 10 Codes, ICD 9 Codes, Laboratories, Medications, Vital Signs | The KPWA/UW-led ovarian/uterine cancer phenotype has been validated at Mayo Clinic, the secondary phenotype development site. Validation results at both the primary and secondary sites were strong and the phenotype is ready for network wide implementation. The pseudo code document posted 11/30/2017 is correct as is and should be used by network sites for phenotype implementation. A validated | Final | David Carrell | Disease or Syndrome |
| Peanut Allergy | Vanderbilt University, Vanderbilt University Medical Center | CPT Codes, Laboratories | Food allergy is defined as an immune response that occurs reproducibly to a given food, typically an immunoglobulin E (IgE)-mediated clinical reaction to specific protein epitopes. Over the last 20-30 years, food allergy has grown into a major public health problem. | Final | Jonathan Hemler | Disease or Syndrome |
| Pediatric Lipid Distribution for Development of Pediatric Familial Hypercholesterolemia | Geisinger | ICD 10 Codes, ICD 9 Codes, Laboratories, Medications | Primary aims of the peds FH phenotyping are: | In development | Ken Borthwick | Other Trait |
| Post-operative Complications from Major General Surgeries Algorithm | Vanderbilt | CPT Codes, ICD 9 Codes | Post-operative Complications as defined by the American College of Surgeon's National Surgical Quality Improvement Program (NSQIP) are a set of 21 clinical conditions that occur 30 days from the date of operation. | Testing | Tom Mou | Disease or Syndrome |
| Prostate Cancer | Northwestern University Feinberg School of Medicine | CPT Codes, ICD 10 Codes, ICD 9 Codes | In development | Luke Rasmussen | Disease or Syndrome | |
| Prostate Cancer Staging | Stanford University School of Medicine | CPT Codes, ICD 10 Codes, ICD 9 Codes, Laboratories, Natural Language Processing | In development | Tina Hernandez-Boussard | Other Trait | |
| Rheumatology Auto-Immune characteristics | Harvard Medical School | Laboratories, Medications | Dear, To identify cases with auto-immune rheumatologic phenotye (for NT198) we request information about auto-antibody (whether it was tested and what the restults were) and drug information (whether it was prescribed) for each patients that is enrolled in eMERGE. We are requesting every mention of any of the expanded generic drugs. | Final | Rachel Knevel | Other Trait |
| RxNorm RxCUI codes for Cancer Therapies | University of Iowa | Medications | This phenotype includes RxNorm RxCUI codes for cancer therapies. These codes map to drug records in the PCORnet Common Data Model and other data sources. The phenotype was developed in 2019. Please see the associated files for additional information. | Final | Ryan Carnahan | Other Trait |
| Sexual assault disclosures in clinical notes | Vanderbilt University Medical Center | Natural Language Processing | Please refer to the attached publication for the algorithm definition and performance metrics. | Validated | Allison Lake | Other Trait |
| Sexual assault disclosures in clinical notes (v2) | Vanderbilt University Medical Center | Natural Language Processing | Updates to the original algorithm listed under PheKB phenotype #1710 and published here. Additional inclusion and exclusion terms have been added. | Testing | Allison Lake | Other Trait |
| Sickle Cell Disease | Medical College of Wisconsin | ICD 9 Codes | Final | Daniel Michalik | Disease or Syndrome |